 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.005G101800.1 |
| Common Name | POPTR_0005s10480g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
WOX |
| Protein Properties |
Length: 249aa MW: 27989 Da PI: 5.5937 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G101800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 67.9 | 1.3e-21 | 104 | 164 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+
Potri.005G101800.1 104 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 164
89*****************99**************************************97 PP
|
| 2 | Wus_type_Homeobox | 102.2 | 3.6e-33 | 103 | 166 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
Potri.005G101800.1 103 ARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 166
789***********************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MDWDNNQENH QDSHQNQREC RNGINGTNVN VNGNGGTNML YVKVMTDEQL ETLRKQIAVY 60
AAICEQLVEM HKTLSAQQDL AGGRLGNLYC DPLMASGGHK ITARQRWTPT PVQLQILERI 120
FDQGNGTPSK QKIKEITSEL SQHGQISETN VYNWFQNRRA RSKRKQLVAS SNNAESEVET 180
EVDSLNEKKK PEIFHAQQNP PRAEDLCFQS PEISSELHFL GDDHLTGKMG VPGNYNLYDQ 240
AEDYGMAG*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 157 | 165 | RRARSKRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF982712 | 0.0 | KF982712.1 Populus tomentosa WOX13a (WOX13a) mRNA, complete cds. |
