PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G086400.1 | ||||||||
Common Name | POPTR_0005s08860g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 224aa MW: 25473.7 Da PI: 9.1577 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.5 | 1.2e-32 | 146 | 204 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Potri.005G086400.1 146 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 204 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-33 | 131 | 204 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-28 | 139 | 205 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.585 | 141 | 206 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-37 | 146 | 205 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 147 | 203 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MATTSQATLN QQPLFEDQEM PTQMGFFSFP PHLTYPQSAS CHQSLKGFII PPSLAADAPS 60 TTNLTETLLL SSVTNKQRED TIASDLGGPH LLSLQRSSAN LWGINNKVEE DNHLGVSTIK 120 LKKIKARRKV REPRFCFKTL SDVDVLDDGY KWRKYGQKVV KNTQHPRSYY RCTQDNCRVK 180 KRVERLAEDP RMVITTYEGR HAHSPSHDLE ESQTPSQFNN FFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-27 | 137 | 203 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-27 | 137 | 203 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.16982 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G086400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145293 | 0.0 | EF145293.1 Populus trichocarpa clone WS01122_O17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456370.1 | 1e-148 | probable WRKY transcription factor 13 | ||||
TrEMBL | A0A2K2ADS2 | 1e-168 | A0A2K2ADS2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s06930.1 | 1e-139 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 3e-59 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G086400.1 |
Entrez Gene | 7477140 |
Publications ? help Back to Top | |||
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