PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G039800.1
Common NamePOPTR_0005s04160g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 346aa    MW: 39090.9 Da    PI: 6.4537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G039800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13142193155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr l+P++   + ++ + a+i   A++++k+L+
  Potri.005G039800.1 142 QRMTHIAVERNRRKQMNEYLSVLRALMPES---YVQRGDQASIIGGAINFVKELE 193
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13140197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-12140195No hitNo description
PROSITE profilePS5088815.148141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-15141208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-8147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MALEAAVFQQ DWFGHSSKEL YNLLGGNWSY DFGLDQNEED QDNSCSSYFL ENQTETFLHE  60
DWNSFQPPNS MVPHLNDLHL TCSNNIPSSS DASIDAANGL LSTAPPTGDH HHHLGDSSTM  120
PATRVKRRRS RSKKNKEEIE NQRMTHIAVE RNRRKQMNEY LSVLRALMPE SYVQRGDQAS  180
IIGGAINFVK ELEQKMQVLG ACKKMKENSD GDNQQHVSSL PFSEFFTFPQ YSTSSIHFEN  240
SVGKNEKLHK TQSTIADIEV TMVESHANLK IRSKRRPKQL LKVVSGLHSM RLTVLHLNVT  300
TVDQIVLYSL SVKVEDDCKL TSVDEIATAV YQMLGRIQEE CVLNC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142153RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.177070.0bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G039800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156480.0AC215648.1 Populus trichocarpa clone POP036-O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382653.10.0transcription factor bHLH94
TrEMBLU5GAK10.0U5GAK1_POPTR; BHLH family protein
STRINGPOPTR_0005s04160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-75bHLH family protein