PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G220300.1 | ||||||||
Common Name | POPTR_0004s22980g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 111aa MW: 12522.2 Da PI: 9.7565 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.8 | 1.3e-15 | 4 | 85 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+l ++ ++rl+lp +++++++g++e l+++de+g++W++++++ ++s++ l++ W +Fv+ +gL +gD++v+ d Potri.004G220300.1 4 FTKKL--DSTDVQRRLTLPENCLKDFQGDHEA--NLKFKDEEGQVWTFRCRVsPRGSSKPALSGDWFSFVRKKGLSTGDVIVIISD 85 66777..44444567***********999666..6***************88545555599*********************9744 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.502 | 2 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-5 | 4 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-17 | 4 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-16 | 4 | 102 | No hit | No description |
SuperFamily | SSF101936 | 8.63E-15 | 4 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-12 | 5 | 85 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MENFTKKLDS TDVQRRLTLP ENCLKDFQGD HEANLKFKDE EGQVWTFRCR VSPRGSSKPA 60 LSGDWFSFVR KKGLSTGDVI VIISDKEKDV AAGEHFKIKI KKSASTHHQN * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1925 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G220300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216689 | 1e-170 | AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002452.1 | 2e-41 | PREDICTED: double-stranded RNA-binding protein 3-like | ||||
TrEMBL | A0A2K2AYG5 | 9e-76 | A0A2K2AYG5_POPTR; B3 family protein | ||||
STRING | POPTR_0004s22980.1 | 4e-75 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13561 | 5 | 27 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G220300.1 |
Entrez Gene | 18098289 |