PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G203400.1 | ||||||||
Common Name | POPTR_0004s21360g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 500aa MW: 55594.4 Da PI: 8.0755 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.2 | 7.4e-08 | 193 | 236 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka ++++Le+ +L++ ++L Potri.004G203400.1 193 AKTLRRLAQNREAARKSRLRKKAraYVQQLETSRIKLSQLEQDL 236 6889*****************96337899999877777776666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-4 | 187 | 239 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 197 | 212 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.5E-31 | 277 | 352 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MASHRVGETG LSSVPSNHHL PYAPVHGINT PSANFINQEG SAFDFGELEE AIVLQGVQIR 60 NDEAKAPLFT VAGRRAATLE MFPSWPIRFQ QTPRGSSKSG GESTDSGSAT NTLSSKADAH 120 LEPESPISKK ASSSDHYNQA FDQKHLQFQD QQQVDMANDT SRTGGRPSQQ NQSPAKTPHE 180 KRKVSTSEKP LDAKTLRRLA QNREAARKSR LRKKARAYVQ QLETSRIKLS QLEQDLQRAR 240 QQGLFLGGCG GAGGNISSGP AIFDMEYARW LEDDHRHMSE LRTGLHSHLS DGELRVIVDG 300 YISHYDEIFR LKVEAAKSDV FHLITGMWST PAERCFLWMG GFRPSELIKM LISQLDPLTE 360 QQIMGIYNLQ QSSQQAEEAL SQGLEQLQQS LVDTIAGGPV IGGMQQMAVA LGKLANLEGF 420 VRQADNLRQQ TLHQLRRILT VRQVARCFLV IGEYYGRLRA LSSLWASRPR ETMMSEDNSC 480 QTTTDLQMVH PSQNHFANF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G203400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455751.1 | 0.0 | transcription factor TGA9 isoform X2 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A2K2AXH8 | 0.0 | A0A2K2AXH8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s21360.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4555 | 33 | 57 | Representative plant | OGRP6496 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G203400.1 |
Entrez Gene | 18098126 |
Publications ? help Back to Top | |||
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