PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G055700.1
Common NamePOPTR_0004s05490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 265aa    MW: 29163.1 Da    PI: 7.8894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G055700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-1175117350
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 
                         ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L  ++  
  Potri.004G055700.1  75 KSHSEAERRRRERINAHLDTLRGLVPCT-----EKMDKATLLAAVISQ 117
                         58*************************8.....7******99888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.08572121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-975118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1276123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1276123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1078127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.01E-4160228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MFDFCFNSNS SSGSGYMNTF DPFPRSLEGF SDVLQGRPMV SQTLVLDAEM GELVKAPARV  60
GNKGISEAKA LAALKSHSEA ERRRRERINA HLDTLRGLVP CTEKMDKATL LAAVISQVNE  120
LKRNALESCK GLLIPTADDE VKVETYFDGT KEGTLYFKAS ICCDYRPELL SDIRQAVDAL  180
PLKMVNAEIS TLGNRLKNEF VFTSNRNKNA VDDAEAMQHL TKSIHHALTS VLEKGSASLE  240
YSPRTTLPNK KRRVTFFDSS SSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G055700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142840.0AC214284.1 Populus trichocarpa clone POP076-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305075.20.0transcription factor bHLH106
TrEMBLB9H2J00.0B9H2J0_POPTR; Uncharacterized protein
STRINGXP_002522566.11e-114(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-34bHLH family protein