PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G192000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 33026.5 Da PI: 6.8697 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 4.9e-05 | 110 | 132 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ Fs++ L H++ H Potri.003G192000.1 110 FSCSYCKREFSTSQALGGHQNAH 132 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.43E-6 | 107 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.4E-4 | 108 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.4E-6 | 109 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.739 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MESIGAERCP SRTSSISAAS EETLCRHSGD HDQKNMINLK MKEKVVSGTE PLTLPDSSSS 60 PVLLDLKLSN DDSLGGSKLE FNLFSPINAG SFHANESIDE TLKLADSRVF SCSYCKREFS 120 TSQALGGHQN AHKQERAIAK RRQGMDVDAF GHFPYYPCSN PSTHPYYGSF NRSLGMEMDS 180 LIRKPSSYPW STSSSGYRFG LGGWSRQAMM NAQPTSIDRL RMESLNSLNG RYGNSTASSS 240 SSSSSSSRFE DINDLFRNFG GSSSSNIATN KPSNIDTDQL QLIEPPKSDQ ANPLGLDLSL 300 KL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G192000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453910.1 | 0.0 | zinc finger protein 1 | ||||
TrEMBL | A0A2K2B9H9 | 0.0 | A0A2K2B9H9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s19120.1 | 1e-154 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 1e-19 | zinc finger protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G192000.1 |