PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.003G093200.1 | ||||||||
Common Name | POPTR_0003s09200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 304aa MW: 34006.1 Da PI: 9.2013 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 99 | 149 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k++ Potri.003G093200.1 99 QRMTHIAVERNRRKLMNEHLAVLRSLMPES---YVRRGDQASIVGGAIEFVKEM 149 79****************************...9*****************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-15 | 97 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.38E-11 | 97 | 154 | No hit | No description |
PROSITE profile | PS50888 | 14.278 | 98 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-10 | 99 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-13 | 99 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-9 | 104 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MALQALSSNE FLNFILYDTI SATPCSSHAS LETTSLLLEN LIPQDHGVSV NSSSLMTGQR 60 CSMGREAVIR RHNLLAVQGK KKRRRKPRVC KNREDAETQR MTHIAVERNR RKLMNEHLAV 120 LRSLMPESYV RRGDQASIVG GAIEFVKEME HFLQSLEAKK LKLKQELTGP NYSAENATTT 180 SEFPQPPFSQ FFVSPQYTWS QIPSKFTSKT AASIADIEAT LIETHANLRI LSRRSPRQLS 240 KLVSGFHTLY LTVLHINVTT MDPLVLYSIS AKLEEGCQLT SVDDLAGAVH HMLRIIEQEA 300 ALC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 79 | 84 | KKKRRR |
2 | 79 | 85 | KKKRRRK |
3 | 79 | 86 | KKKRRRKP |
4 | 80 | 85 | KKRRRK |
5 | 99 | 110 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.11872 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.003G093200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385664.2 | 0.0 | transcription factor bHLH71 | ||||
Swissprot | Q56XR0 | 4e-74 | BH071_ARATH; Transcription factor bHLH71 | ||||
TrEMBL | A0A2K2B479 | 0.0 | A0A2K2B479_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s09200.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10644 | 31 | 38 | Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46690.1 | 4e-60 | beta HLH protein 71 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.003G093200.1 |
Entrez Gene | 18096981 |
Publications ? help Back to Top | |||
---|---|---|---|
|