PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G051600.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 335aa MW: 36591.7 Da PI: 6.0905

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G051600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	193	231	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +++ + +K + a++L +A+ YI+ Lq Potri.003G051600.1 193 RKEKLGDRITALHQMVSPF-----GKTDTASVLLEAIGYIRFLQ 231 6677888999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.363	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-6	191	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-9	191	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.01E-5	191	235	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAGNPSWWSM HPPSQQPSAL LSSSPSSYPS QYVLGSSPFP LNSLPDNQEL PQSWSQLLLG 60 GSSGDEDRYG LSQFQPKKLE NWEDQILNPS PSISLDADVK QEVSHNSNLY GHGEEDFQAA 120 RPTAWPQAMP VSSPRSCVTS LSSSTSILDF SYNKADGASQ HPDQSSECNS TATGGVCKKA 180 RVQPSSSQPL KVRKEKLGDR ITALHQMVSP FGKTDTASVL LEAIGYIRFL QGQIEVMFLR 240 HLIYILCKQL RISEKHAALS SPYMGTASPN MRNQQQSVQE ERNSAFSEDM RQDNQDQPKD 300 LRSRGLCLVP VSCTQHVGSD NGADYWAPAI GGGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G051600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455206.1	0.0	transcription factor bHLH68 isoform X1
Refseq	XP_024455213.1	0.0	transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	4e-58	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2K2B1T0	0.0	A0A2K2B1T0_POPTR; BHLH family protein
STRING	POPTR_0001s18660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79
Representative plant	OGRP3780	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	8e-56	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.003G051600.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]