PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G010800.1
Common NamePOPTR_0003s00440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 111aa    MW: 12626.5 Da    PI: 9.9659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G010800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.79e-13590189
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                        f k+l  +d   ++rl l+ ++++++  g    +  l+++de+g++W++++++  +++++  l++ W  Fv++++Lk+gD++v+ ld++++
  Potri.003G010800.1  5 FTKKL--NDIDIERRLLLSENCIKDFpRGH---EAYLKFKDEDGQVWTFRCRVpPGGGSKPALSGDWFLFVRSKHLKVGDVIVIALDREKD 90
                        66777..67777788999999999995333...346***************99544444599***********************998744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.4881105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-14490IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-13589IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-45105IPR003340B3 DNA binding domain
CDDcd100171.37E-155103No hitNo description
PfamPF023623.5E-10690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MEKNFTKKLN DIDIERRLLL SENCIKDFPR GHEAYLKFKD EDGQVWTFRC RVPPGGGSKP  60
ALSGDWFLFV RSKHLKVGDV IVIALDREKD QAAGEQFTIK VKKTTSTTRN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G010800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139260.0AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141000.0AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.11e-66PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AZU26e-76A0A2K2AZU2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00440.15e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527