PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G239400.1

Common Name

POPTR_0002s24040g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 196aa MW: 22277.2 Da PI: 8.3273

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G239400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.4	1.6e-25	28	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY+eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++++ +++r++ r gCka++ vk++k+gkw+vt++e++HnH+l Potri.002G239400.1 28 KFYSEYARRLGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNNRTIvgPGPDKKPRPSAREGCKATILVKMDKSGKWVVTRFEKDHNHPL 118 6*************************************99988777778999**********************************9 PP FAR1 90 a 90 + Potri.002G239400.1 119 V 119 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-23	28	119	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDVEEEEEAG IVEPCVGMEF ESEDAARKFY SEYARRLGFV VRVMQRRRSG IDGRTLARRL 60 GCNKQGFSPN NRTIVGPGPD KKPRPSAREG CKATILVKMD KSGKWVVTRF EKDHNHPLVV 120 TASGFSSSGD KDKKIEELTK ELEHQDHLCA TYREKLVSFM NSIEEQTEEL ASKIQLIVDN 180 VRKVESEVQN FSRRR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G239400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002303021.1	1e-143	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024451613.1	1e-143	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	4e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9GNH5	1e-142	B9GNH5_POPTR; FAR1 family protein
STRING	POPTR_0002s24040.1	1e-143	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	8e-70	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.002G239400.1
Entrez Gene	7462455

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]