PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G176900.1
Common NamePOPTR_0002s17750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 492aa    MW: 54710.6 Da    PI: 5.2782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G176900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12317362454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Potri.002G176900.1 317 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 362
                         799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-5325209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.238313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-18314377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.89E-14316366No hitNo description
Gene3DG3DSA:4.10.280.109.3E-17317377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-10317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-16319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEELIISPSS PSSPVSLSQE TPPTLQQRLQ FIVQNQPDWW SYAIFWQTSN DDSGRIFLGW  60
GDGHFQGSKD TSPKPNTFSN SRMTISNSER KRVMMKGIQS LIGECHDLDM SLMDGNDATD  120
SEWFYVMSLT RSFSPGDGIL GKAYTTGSLI WLTGGHELQF YNCERVKEAQ MHGIETLVCI  180
PTSCGVLELG SSSVIRENWG LVQQAKSLFG SDLSAYLVPK GPNNSSEEPT QFLDRSISFA  240
DMGIIAGLQE DCAVDREQKN ARETEEANKR NANKPGLSYL NSEHSDSDFP LLAMHMEKRI  300
PKKRGRKPGL GRDAPLNHVE AERQRREKLN HRFYALRAVV PNVSRMDKAS LLSDAVSYIN  360
ELKAKVDELE SQLERESKKV KLEVADNLDN QSTTTSVDQS ACRPNSAGGA GLALEVEIKF  420
VGNDAMIRVQ SENVNYPASR LMCALRELEF QVHHASMSCV NELMLQDVVV RVPDGLRTEE  480
ALKSALLGRL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-33192093192Transcription factor MYC3
4rqw_B5e-33192093192Transcription factor MYC3
4rs9_A5e-33192093192Transcription factor MYC3
4yz6_A5e-33192093192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.2760.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G176900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469390.0EF146939.1 Populus trichocarpa clone WS01225_C18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301432.10.0transcription factor MYC2
TrEMBLB9GR680.0B9GR68_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.16e-88bHLH family protein