PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G143800.1 | ||||||||
Common Name | POPTR_0002s14460g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 333aa MW: 37584.9 Da PI: 7.1553 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksFs+ L H+r+H Potri.002G143800.1 4 HKCKLCFKSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 197 | 219 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Potri.002G143800.1 197 YKCETCNKVFKSYQALGGHRASH 219 9************9999998887 PP | |||||||
3 | zf-C2H2 | 12.8 | 0.00035 | 251 | 273 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H Potri.002G143800.1 251 HECPYCFRVFSSGQALGGHKRSH 273 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.85E-5 | 3 | 30 | No hit | No description |
SMART | SM00355 | 0.038 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.679 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-6 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.87E-8 | 197 | 219 | No hit | No description |
SMART | SM00355 | 0.01 | 197 | 219 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.4E-11 | 197 | 221 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.492 | 197 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 199 | 219 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.87E-8 | 246 | 273 | No hit | No description |
Pfam | PF13912 | 3.0E-11 | 250 | 274 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.286 | 251 | 273 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 251 | 273 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 253 | 273 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEKHKCKLCF KSFSNGRALG GHMRSHMLNL PIPPKLEDQF PDIEVNPEFS FAAVDAGSVV 60 LQDRESETES SKNPTRRRSK RTKSLLEHHH QYHQQRPRQE QENNIIIKKL EFKKMGTIKA 120 AAESSWGHEP EPVSSISGTT TEEDVAFCLV MLSRDKWKRK EQENQEEEQE LEEELAEAET 180 DDSDEFKSCK TKTRGKYKCE TCNKVFKSYQ ALGGHRASHK KLKVYTPSNE PKLERTENAG 240 ASTSLPEKKT HECPYCFRVF SSGQALGGHK RSHLIGVAAS SSTPARSSTR IGDNNWGFID 300 LNLPAPVDDD DISQVDQLSA VSDAEFVNYV RR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G143800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450701.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A3N7EQJ9 | 0.0 | A0A3N7EQJ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s14460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 | Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-67 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G143800.1 |
Entrez Gene | 7453950 |