PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G108400.1

Common Name

POPTR_0002s10910g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 348aa MW: 39445.6 Da PI: 4.4174

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G108400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	181	224	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Potri.002G108400.1 181 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 224 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-16	178	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	181	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-12	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-15	182	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.47E-5	182	228	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEINGHDFLE ELIALSRESW QPTPNYPSEM NELFSGSFNH GCFEEIPATL PQTSFCPEGL 60 ISSPLKQDFN NYYFNEVFCP FGDEFSAPQF TDEFSSAPQF TDSSYNTLDT PPFPVQDDTP 120 MSMMEDEELG LLANDQQNLQ MQGTCKVEPI QSPEVSAFNA GICPERKIRG KKMEGQPSKN 180 LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY MKELLERINS LQQEIEVGSE 240 ELKMISIFKD TKPNEIVVRN SPKFEVERRN EDTRIDICCA TKPGLLLSSV TTLETLGLEI 300 QQCVISCFND FTMQASCSEE LEQRTLISSE HIKQALFKNA GYGGRCL*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEINGHDFLE ELIALSRESW QPTPNYPSEM NELFSGSFNH GCFEEIPATL PQTSFCPEGL  60
ISSPLKQDFN NYYFNEVFCP FGDEFSAPQF TDEFSSAPQF TDSSYNTLDT PPFPVQDDTP  120
MSMMEDEELG LLANDQQNLQ MQGTCKVEPI QSPEVSAFNA GICPERKIRG KKMEGQPSKN  180
LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY MKELLERINS LQQEIEVGSE  240
ELKMISIFKD TKPNEIVVRN SPKFEVERRN EDTRIDICCA TKPGLLLSSV TTLETLGLEI  300
QQCVISCFND FTMQASCSEE LEQRTLISSE HIKQALFKNA GYGGRCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	190	ERRRRKRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.13125	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G108400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144766	0.0	EF144766.1 Populus trichocarpa clone WS01117_P21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302353.1	0.0	transcription factor bHLH93
Swissprot	Q9LSL1	5e-86	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A9P9D2	0.0	A9P9D2_POPTR; BHLH family protein
STRING	POPTR_0002s10910.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103
Representative plant	OGRP2636	11	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-75	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Potri.002G108400.1
Entrez Gene	7461834

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]