PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G055400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 584aa    MW: 64164.8 Da    PI: 6.5651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G055400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.59e-17388434455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Potri.002G055400.1 388 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 434
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-20382445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-17387438No hitNo description
Gene3DG3DSA:4.10.280.102.2E-20388442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-14388434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
SVSCPCLSNW ELKTDPPLSL SLGLVHSQIS LYTAFYRERE REVIVEVELV WSAMNHCIPD  60
WNLEGDLPVS NQKNPIEPDN ELVELLWRNG QVVMHSQTQR KPNPHVQKHD SPTVRGYDST  120
LNSSHLIQDD ETVSWIHDPL EDSFEKEFCS NFFSELPPPL SDQISEEKSA KFDASKTSHQ  180
QQQLNNNKHP VVPEFPGNPM PPPRIQVQEQ NHISVGGFGK AVNVNFSQFS APLKVGDFRS  240
SSRQFGGQGS GDFSQGEARE CSVVTVGSSN QTPRDRFLSR ASGNAIETGT GLSAGPSIDD  300
PRKVISQSER GKGDQTLDPT ATSSSGGSGS SFARTCKQSA VPSRGQKRKT MDAEESECQS  360
EDAELDSAVA NKPAKRSGST RRSRAAEVHN LSERRRRDRI NEKMRALQEL IPHCNKTDKA  420
SMLDEAIEYL KSLQLQLQVM WMGSGIVPVM FPGVQHFMSR MGMGMGMGPP PLPSMQNPMH  480
LPRVPLVDQS ISMTPTQNQA VICQTPVLNP VNYQNQMQNP TFSDQYARFM GFHMQAASQP  540
MNMFRFGSQT VQQNQMMAPP NSGGGPLSAG TAASDAPPSG KTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392397ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.179760.0catkin| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G055400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386276.10.0transcription factor PIF4
RefseqXP_024449874.10.0transcription factor PIF4
RefseqXP_024449875.10.0transcription factor PIF4
RefseqXP_024449876.10.0transcription factor PIF4
TrEMBLB9GSQ90.0B9GSQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05630.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.29e-51phytochrome interacting factor 4