PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G032400.1
Common NamePOPTR_0002s03380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 433aa    MW: 47018.3 Da    PI: 6.8526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G032400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.5e-053193581155
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Potri.002G032400.1 319 ARKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 358
                         57788999*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.084308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0094316363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10318369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-5320362No hitNo description
Gene3DG3DSA:4.10.280.105.4E-9322365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MESANLHHQH DQLQDQFVGS SSLTTTTPSS DAEAGSTHAW TQTITLNSGN LSPNYNGVIF  60
NPRQKYESPV TSVNSTMIQD LGFQHWNNNA GNFNSLSAYH ELQLSKIKEE LSSDSFPKFT  120
EMLYSPSSTI EDPHPSSSSY FKDEQEGLSL GEKLLLKTIS PGFPRNGHDQ FSPREISSCH  180
HNGSSFGSAI PSRESFSQIY PSINISNLNQ PSSPLISGSF DMNLQGLDLL TSTRFSGSFA  240
QPSDDPLAMF NKDSLSFGLD RMQQASQRPS CSPNKISSNN EMTEAKRPNR SLMEPKATQA  300
AAPKKSRLES RVSCPPLKAR KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQNQ  360
VETLSIPYMK SSGNKTSRSI QAAASNLGDE EPKRDLRSRG LCLVPLSCMS YVTSDGGGGG  420
SIWPPPNFGG GT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.135581e-160stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G032400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450359.10.0transcription factor bHLH110 isoform X2
TrEMBLA0A2K2BCS50.0A0A2K2BCS5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Representative plantOGRP1021979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-72bHLH family protein