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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.002G008800.1 |
Common Name | POPTR_0002s00980g |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
WOX |
Protein Properties |
Length: 216aa MW: 24483.6 Da PI: 5.1489 |
Description |
WOX family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.002G008800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 64.9 | 1.2e-20 | 76 | 136 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+t+++ ql++Le+ Fe+ n +p ++++++++++l +++e++V++WFqNrRa+ k+
Potri.002G008800.1 76 RQRWTPKPAQLQILEQIFEQcNATPGRQKIKDITRELaqhgQISETNVYNWFQNRRARSKR 136
89*****************99**************************************97 PP
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2 | Wus_type_Homeobox | 95.7 | 3.9e-31 | 75 | 138 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+r+RWtP+p Q++iLe+++++ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
Potri.002G008800.1 75 SRQRWTPKPAQLQILEQIFEQCNATPGRQKIKDITRELAQHGQISETNVYNWFQNRRARSKRKQ 138
589***********************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MEEGRFQNGG GLGVKVMTDE QMEMLRKQIS VYATICEQLV EMHKALSAQQ DFAGMGLGNP 60 YCDPLLSSAV HKIGSRQRWT PKPAQLQILE QIFEQCNATP GRQKIKDITR ELAQHGQISE 120 TNVYNWFQNR RARSKRKQSA VVPNNGESEM ETDIESLKEK KTRAEDSQPD ENTTPMADHM 180 YFNSPDIGFD QLMGKIESPG SCIPYWQMEQ YDLFG*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 129 | 137 | RRARSKRKQ |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ010810 | 0.0 | AJ010810.1 Populus tremula X Populus tremuloides mRNA for homeodomain protein HB1. |