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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.001G473200.1 |
| Common Name | POPTR_0001s47720g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
GRAS |
| Protein Properties |
Length: 439aa MW: 49639.5 Da PI: 6.7698 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.001G473200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 398.3 | 8e-122 | 31 | 437 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal......... 81
++lL++cA+ +s++d+++aq+lL++l + +sp+gd+++Rl++ f++AL+ rl+r +a p+++t++ + ++++
Potri.001G473200.1 31 RQLLVSCADLISQSDFSAAQRLLSHLLSTynSSPYGDSTERLVHQFVRALSLRLNR------HANPARSTTTAPLVFNMNSIappppppct 115
799**********************977767*************************......66666666666677777777789999999 PP
GRAS 82 ..........................klfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egpps 141
+++++P+++fshltaNqaIlea++ g++++HiiDfdi++G+QWp+L+qaLa+R+ ++pp+
Potri.001G473200.1 116 ttntnnnkrmvisyesmdqdtlqscyLSLNQITPFIRFSHLTANQAILEAIQvGQQAIHIIDFDIMHGVQWPPLMQALADRSnntlHPPPM 206
99999999999999**999999875444***********************94669**************************777777*** PP
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227
lRiTg g+ + l++tg+rL kfA++lg++f+f++l +l+ +++ + p+EalaVn+vl lhr+l ++ + e +
Potri.001G473200.1 207 LRITGTGH----DLSILHRTGDRLLKFAHSLGLRFQFHPLlllnnDPASLALYLSSAITLLPDEALAVNCVLCLHRFLMDD---SRELLLL 290
********....9**************************96642212244455667889999***************9443...334568* PP
GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
L+ +k l+P+vv+v+e+ea+hn+ Fl+rfleal++y+alfdslea+lp++s+er +vE+ ++grei+++va+eg+ rrerh+++e+W+++
Potri.001G473200.1 291 LHKIKALNPNVVTVAEREANHNHLLFLQRFLEALDHYTALFDSLEATLPPNSKERLSVEQIWFGREIMDIVAAEGEGRRERHQRFETWEMM 381
******************************************************************************************* PP
GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
l+++GF++vpls +a +qaklllr ++ s+gy+++ ++s++lgW++++L+svS+W
Potri.001G473200.1 382 LKSSGFSNVPLSPFALSQAKLLLRLHYpSKGYQLQIVNNSFFLGWQNHSLFSVSSW 437
******************************************************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010014 | Biological Process | meristem initiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 439 aa
Download sequence Send
to blast |
MSSPNSHDHD QEQDQEEEIN PPTLTTAFHT RQLLVSCADL ISQSDFSAAQ RLLSHLLSTY 60
NSSPYGDSTE RLVHQFVRAL SLRLNRHANP ARSTTTAPLV FNMNSIAPPP PPPCTTTNTN 120
NNKRMVISYE SMDQDTLQSC YLSLNQITPF IRFSHLTANQ AILEAIQVGQ QAIHIIDFDI 180
MHGVQWPPLM QALADRSNNT LHPPPMLRIT GTGHDLSILH RTGDRLLKFA HSLGLRFQFH 240
PLLLLNNDPA SLALYLSSAI TLLPDEALAV NCVLCLHRFL MDDSRELLLL LHKIKALNPN 300
VVTVAEREAN HNHLLFLQRF LEALDHYTAL FDSLEATLPP NSKERLSVEQ IWFGREIMDI 360
VAAEGEGRRE RHQRFETWEM MLKSSGFSNV PLSPFALSQA KLLLRLHYPS KGYQLQIVNN 420
SFFLGWQNHS LFSVSSWH*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC209044 | 0.0 | AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence. |
