PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G461000.1

Common Name

POPTR_0001s46530g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 299aa MW: 33413.6 Da PI: 4.4876

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G461000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.2	2.2e-06	173	217	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ ++L +l+P + K++ ae+ + A +Y+k Lq Potri.001G461000.1 173 SIAARERRRKITEKTQQLGKLIPGgN------KMNTAEMFQAASKYVKFLQ 217 67889****************955......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.909	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-10	170	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.75E-8	170	220	No hit	No description
SuperFamily	SSF47459	2.49E-10	171	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.5E-8	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MALSFCSNLG SSLQHHSLPE LTAYPQGSVE IGNHELFGCN DNLMLSDSFI NPLYDVEDQL 60 FYSDSYTNLL PFFSSPSDNT SSLSPETSPL EDFESYACPK RQKLYTDHFN TKFATSFFEG 120 YVPNPNPGPP EFLPEIPVLD PKFQVPTNFN VGRTESLMDS KKPSTGVSLS AQSIAARERR 180 RKITEKTQQL GKLIPGGNKM NTAEMFQAAS KYVKFLQAQI GILELTGTTQ ENREAMHTQE 240 LQTLVTSPTI QEKLYLEQKC LVPRDFVQTI ANDCEIQAKP LNIVEEIDQE FLGEQFLG*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G461000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN651906	0.0	JN651906.1 Populus koreana abscisic acid-responsive protein bHLH2 (bHLH2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452005.1	0.0	transcription factor bHLH52 isoform X1
Swissprot	Q84RD0	1e-32	BH053_ARATH; Transcription factor bHLH53
TrEMBL	B9GGH4	0.0	B9GGH4_POPTR; Uncharacterized protein
STRING	POPTR_0001s46530.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3459	30	65
Representative plant	OGRP5969	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	3e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.001G461000.1
Entrez Gene	7490758

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]