PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.001G415200.1 | ||||||||
Common Name | POPTR_0001s44090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 586aa MW: 65136.3 Da PI: 6.1325 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 427.7 | 9.5e-131 | 215 | 584 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA+a+++++ ++ ++l ++ + +s +g+p+qRl ay+ e+L ar +s+ ++y++l+++e + ++ l+++++++e++P+l Potri.001G415200.1 215 LKQLLIACAKALAENNVSAFDNLTEKARSVVSISGEPIQRLGAYLIEGLVARKESSGANIYRTLKCREPE---GKDLLSYMHILYEICPYL 302 689******************************************************************9...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kf++++aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + le++++rL+ + e++++p+ef+ Potri.001G415200.1 303 KFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEAVARRLSAISEKFNIPVEFHG 393 ***********************************************************999999************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 v d++ e+L+v+pgEalaVn+ lqlh+++desv+++++rd +L+++ks +Pkvv++veqe+++n+++F++rf+e+l+yy a+f+s+ Potri.001G415200.1 394 -VPVFAPDVTKEMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVETLNYYLAMFESI 483 .6888999*********************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +++lpr+ +eri+vE+++l+r+ vnv+aceg+er+erhe ++kW++r+++aGF+++pls+++++ +k+llr+++ + y++ e++g+++lgW Potri.001G415200.1 484 DVTLPRDRKERISVEQHCLARDMVNVIACEGKERVERHELFRKWKSRFMMAGFQQYPLSTYVNSVIKSLLRTYS-EHYTLVENDGAMLLGW 573 **************************************************************************.55************** PP GRAS 363 kdrpLvsvSaW 373 kdr+L+s+SaW Potri.001G415200.1 574 KDRNLISASAW 584 *********** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.145 | 189 | 566 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-128 | 215 | 584 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 586 aa Download sequence Send to blast |
MESHQYFGYG VTGAGLSYSS SYPSVPSIPN RLFGSLKFDI GNSPSSPFYT QFDICDTYTA 60 TLSDSQECYS STDNLSGVSP SRNSSLESNS YFNRPSPSVD CRLESLQLFS GGTSSLQDAS 120 SSQNIKHALQ ELETALMGPD DDEELNTSNA SLGESSSRPQ TSDQKPKAWR QGSHVIQNQT 180 SFVSRQRQLG EGAHVEKRQK SMEEGPLHGI PPGDLKQLLI ACAKALAENN VSAFDNLTEK 240 ARSVVSISGE PIQRLGAYLI EGLVARKESS GANIYRTLKC REPEGKDLLS YMHILYEICP 300 YLKFGYMAAN GAIAEACRNE DRIHIIDFQI AQGTQWMTLL QALAARPSGA PHVRITGIDD 360 PVSKYARGDG LEAVARRLSA ISEKFNIPVE FHGVPVFAPD VTKEMLDVRP GEALAVNFPL 420 QLHHTPDESV DVNNPRDGLL RMIKSFNPKV VTLVEQESNT NTTPFVTRFV ETLNYYLAMF 480 ESIDVTLPRD RKERISVEQH CLARDMVNVI ACEGKERVER HELFRKWKSR FMMAGFQQYP 540 LSTYVNSVIK SLLRTYSEHY TLVENDGAML LGWKDRNLIS ASAWH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-61 | 197 | 584 | 8 | 378 | Protein SCARECROW |
5b3h_A | 2e-61 | 197 | 584 | 7 | 377 | Protein SCARECROW |
5b3h_D | 2e-61 | 197 | 584 | 7 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.2185 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.001G415200.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006370596.2 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A2K2CBZ3 | 0.0 | A0A2K2CBZ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s44090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4299 | 33 | 60 | Representative plant | OGRP8948 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-180 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.001G415200.1 |
Entrez Gene | 18095876 |
Publications ? help Back to Top | |||
---|---|---|---|
|