PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G295700.1 | ||||||||
Common Name | POPTR_0001s30280g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22384.3 Da PI: 7.3075 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.5 | 9.8e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++dCvl++ + p++q++++ +v+k+FG++ ++++++++p+++r+ +++sl++eA ra +Pv+Gavg++++++++ Potri.001G295700.1 2 SCNGCRVLRKGCSEDCVLRQGIgwinnPQAQANATVFVAKFFGRAGLMSFMSSVPQSQRPSLFQSLLFEAVGRAVNPVSGAVGLLWTGNWH 92 6****************************************************************************************** PP DUF260 87 leqlkaelal 96 l+q+++ ++l Potri.001G295700.1 93 LCQKAVMAVL 102 ***9987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.352 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-24 | 2 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEDCVLR QGIGWINNPQ AQANATVFVA KFFGRAGLMS FMSSVPQSQR 60 PSLFQSLLFE AVGRAVNPVS GAVGLLWTGN WHLCQKAVMA VLRRGTVEPL PELEGGVSGP 120 EFDSVSESGG FRPPIDHVSS GSQKLKRKRN DDGAKYGQTT DLDLRLMYQG SESPSEESET 180 TTLESSLGDN CRFHEGGEPK LLRLFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G295700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300261.1 | 1e-151 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 2e-58 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | B9GI82 | 1e-150 | B9GI82_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s30280.1 | 1e-151 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-60 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G295700.1 |
Entrez Gene | 7478651 |