PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G287200.1
Common NamePOPTR_0001s29400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 331aa    MW: 36953.3 Da    PI: 8.4775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G287200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12152199355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Potri.001G287200.1 152 QDHIIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 199
                         6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-17153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-17153211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-12154203No hitNo description
SMARTSM003531.2E-14155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
METSSVTALC ELGMEDSSFT NQWFMNSLDD TSLLPFAAAF GENIHHSFSH QNFNLKTSMD  60
SVRPTKQLRT DHLSNPQPAF SPNILSFVNS NHANQMGLMK PKEEAVCSKS INNLPSDMVV  120
SQDSFGNQYY AFKASQGPKM ISANGTRLSQ SQDHIIAERK RREKLSQRFI ALSAVVPGLK  180
KMDKASVLGD AIKYLKQLQE RVKTLEEQTK RKTMESVVIV KKSHVYVDEG GENSSSDVSK  240
GPIHETLPEL EARFCDKHVL IRIHCKKNKG VLEKTVAEVE KLHLSVINSS VLTFGTCALD  300
VTIIAQMDID FNMSVKDLVK TLRSAFQYFM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14153202857Transcription factor MYC2
5gnj_B2e-14153202857Transcription factor MYC2
5gnj_E2e-14153202857Transcription factor MYC2
5gnj_F2e-14153202857Transcription factor MYC2
5gnj_G2e-14153202857Transcription factor MYC2
5gnj_I2e-14153202857Transcription factor MYC2
5gnj_M2e-14153202857Transcription factor MYC2
5gnj_N2e-14153202857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G287200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300300.30.0transcription factor bHLH18
RefseqXP_024463812.10.0transcription factor bHLH18
RefseqXP_024463821.10.0transcription factor bHLH18
RefseqXP_024463825.10.0transcription factor bHLH18
RefseqXP_024463830.10.0transcription factor bHLH18
TrEMBLA0A2K2C5920.0A0A2K2C592_POPTR; Uncharacterized protein
STRINGPOPTR_0001s29400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-69bHLH family protein