PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G220700.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 274aa MW: 30885 Da PI: 10.0018

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G220700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40	8.3e-13	196	239	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r +rk+kNRe+A rsR+RK+a+ eL kv Le+eN +Lkke Potri.001G220700.1 196 RRLKRKIKNRESAARSRARKQAYHNELVSKVSRLEEENIKLKKE 239 799***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.4E-12	190	239	No hit	No description
SMART	SM00338	2.0E-8	192	250	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	194	239	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.02E-15	196	238	No hit	No description
Pfam	PF00170	1.9E-11	196	239	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-10	196	239	No hit	No description
PROSITE pattern	PS00036	0	199	214	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGVQTMASQS NGQQSHMQPC QLMRQTSWYN LTLNEVENQM GNLGKPLCSM NLDELLKNVW 60 STEANQSMGM DSESTATSSL QRQASFTLAR ALSGKTVAQV WKEIQEGQKK RFGQEMKVQE 120 REQTLGETTL EDFLVQAGLF TEATISPSLD LVTVAAVTPQ CFPQNMVLSS SPSTGTLSDS 180 TTSGWNRDAP EKSTERRLKR KIKNRESAAR SRARKQAYHN ELVSKVSRLE EENIKLKKEK 240 VGRIFHFNQA VFYFFFREHL STTPRGKMKE MAK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G220700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184074	0.0	AC184074.2 Populus trichocarpa clone Pop1-51H15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298289.2	1e-176	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Refseq	XP_024449588.1	1e-176	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	1e-53	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	B9GI21	1e-175	B9GI21_POPTR; Uncharacterized protein
STRING	POPTR_0001s22790.1	1e-176	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12464	25	32
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	1e-41	bZIP family protein

Link Out ? help Back to Top
Phytozome	Potri.001G220700.1

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]