PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G184800.1
Common NamePOPTR_0001s18550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 498aa    MW: 55800.8 Da    PI: 7.7532
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G184800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.5e-1491130242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         ++++C+Ck+skClk+YCeCfa+g++C+e C+C +C+N+ e+
  Potri.001G184800.1  91 SHRQCHCKQSKCLKLYCECFASGSYCDE-CSCANCHNNVEN 130
                         5789***********************9.********9875 PP
2TCR50.73.6e-16176214240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         + kgC+Ck++ ClkkYCeCf+a+  Cse+CkC +CkN e
  Potri.001G184800.1 176 HIKGCHCKRTGCLKKYCECFQANILCSENCKCVSCKNLE 214
                         789**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.1E-1590130IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.61691215IPR005172CRC domain
PfamPF036382.9E-1193127IPR005172CRC domain
SMARTSM011143.4E-17175216IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12178213IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MTSFFPPETV ESVKRELGKS DFTPRKLVFT EFGLSPVVSA SPLHKSPHER LLLQTKLHVL  60
PRSPLSFKKS ESPRISLPQA RTKIINGTPK SHRQCHCKQS KCLKLYCECF ASGSYCDECS  120
CANCHNNVEN EDVRREAAEC ILERNPNAFK PKITGSPCTP PDDGDAAKDV LVMAKHIKGC  180
HCKRTGCLKK YCECFQANIL CSENCKCVSC KNLEGRELGM VVTSENHCKT KAYIQQENAN  240
SSSAVVSSSH IFSQESRKRT FRELFDSNMR DTEIHEFTKH YAVNPVGVHV SIPTLRADCV  300
CQIASSAALG SSKLTYRSLL ADAIHPLDTR ELCSLLVVVS EAAKFLADEH CKAQIKEVKE  360
YQMACDLEKD CKKEPDVHQV VPHNQFPGSR TDITVMDNSR SCDIDMQDGG PFSSEEDYLM  420
CDKKDKLFTR SASLDQNLNH GCNENFTKEH ERLVLTCLRD CLGKLIAFGT MKGIGLPFLF  480
LNRYKNYQFE SLSTIQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-24902149122Protein lin-54 homolog
5fd3_B1e-24902149122Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G184800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090000.0AC209000.1 Populus trichocarpa clone POP023-H09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299717.30.0protein tesmin/TSO1-like CXC 6
TrEMBLB9GG440.0B9GG44_POPTR; Uncharacterized protein
STRINGPOPTR_0001s18550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2255944
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.11e-91Tesmin/TSO1-like CXC domain-containing protein