PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G184800.1 | ||||||||
Common Name | POPTR_0001s18550g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CPP | ||||||||
Protein Properties | Length: 498aa MW: 55800.8 Da PI: 7.7532 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.8 | 2.5e-14 | 91 | 130 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++++C+Ck+skClk+YCeCfa+g++C+e C+C +C+N+ e+ Potri.001G184800.1 91 SHRQCHCKQSKCLKLYCECFASGSYCDE-CSCANCHNNVEN 130 5789***********************9.********9875 PP | |||||||
2 | TCR | 50.7 | 3.6e-16 | 176 | 214 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 + kgC+Ck++ ClkkYCeCf+a+ Cse+CkC +CkN e Potri.001G184800.1 176 HIKGCHCKRTGCLKKYCECFQANILCSENCKCVSCKNLE 214 789**********************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 7.1E-15 | 90 | 130 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.616 | 91 | 215 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.9E-11 | 93 | 127 | IPR005172 | CRC domain |
SMART | SM01114 | 3.4E-17 | 175 | 216 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 178 | 213 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MTSFFPPETV ESVKRELGKS DFTPRKLVFT EFGLSPVVSA SPLHKSPHER LLLQTKLHVL 60 PRSPLSFKKS ESPRISLPQA RTKIINGTPK SHRQCHCKQS KCLKLYCECF ASGSYCDECS 120 CANCHNNVEN EDVRREAAEC ILERNPNAFK PKITGSPCTP PDDGDAAKDV LVMAKHIKGC 180 HCKRTGCLKK YCECFQANIL CSENCKCVSC KNLEGRELGM VVTSENHCKT KAYIQQENAN 240 SSSAVVSSSH IFSQESRKRT FRELFDSNMR DTEIHEFTKH YAVNPVGVHV SIPTLRADCV 300 CQIASSAALG SSKLTYRSLL ADAIHPLDTR ELCSLLVVVS EAAKFLADEH CKAQIKEVKE 360 YQMACDLEKD CKKEPDVHQV VPHNQFPGSR TDITVMDNSR SCDIDMQDGG PFSSEEDYLM 420 CDKKDKLFTR SASLDQNLNH GCNENFTKEH ERLVLTCLRD CLGKLIAFGT MKGIGLPFLF 480 LNRYKNYQFE SLSTIQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-24 | 90 | 214 | 9 | 122 | Protein lin-54 homolog |
5fd3_B | 1e-24 | 90 | 214 | 9 | 122 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G184800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209000 | 0.0 | AC209000.1 Populus trichocarpa clone POP023-H09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299717.3 | 0.0 | protein tesmin/TSO1-like CXC 6 | ||||
TrEMBL | B9GG44 | 0.0 | B9GG44_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s18550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22559 | 4 | 4 | Representative plant | OGRP1469 | 17 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 1e-91 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G184800.1 |
Entrez Gene | 7470563 |