PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G080300.1 | ||||||||
Common Name | POPTR_0001s11730g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 345aa MW: 36914 Da PI: 10.2835 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.3 | 1.5e-12 | 87 | 132 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ + lG+g+W+ I++++ +Rt+ q+ s+ qky Potri.001G080300.1 87 KPWTEEEHRTFLSGLSNLGKGDWRGISKKFVITRTPSQVASHAQKY 132 58*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 9.01 | 7 | 24 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.157 | 81 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-16 | 82 | 137 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-16 | 84 | 136 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.8E-10 | 85 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-11 | 85 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-11 | 87 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-8 | 88 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MVKEAARKCS HCGQNGHNSR TCTKDCIKLF GVSIEKREQT IKGSASLDNI ASLDDIHGAH 60 HVDPGYSSDG VIGSKRGRTA YTRKKGKPWT EEEHRTFLSG LSNLGKGDWR GISKKFVITR 120 TPSQVASHAQ KYFLRQQASN EKKKRRSSLF DMTFKGTDLA SHQDAPKLPL IKTCGSSSQA 180 STSSASPLRK AGEDIPSQAI SPLHLINQFP LLCLHNPQVM SPTVAAGTGV SNYNPCMQRV 240 LANGRRSFPA SKAAPFVSMM NYPRAYHPYM LNSPASLAGC APCIAHQPSG IPSPSSFPQS 300 FSPQGASTSL AKMEDPLELK IGQPPKSPQG ANISSPASGA ISVI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 145 | KKKRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00573 | DAP | Transfer from AT5G61620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G080300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002297928.1 | 0.0 | probable transcription factor At5g61620 | ||||
TrEMBL | B9GK38 | 0.0 | B9GK38_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11730.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13874 | 19 | 21 | Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 4e-54 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G080300.1 |
Entrez Gene | 7491492 |