PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G066900.1
Common NamePOPTR_0001s13060g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 347aa    MW: 38046.6 Da    PI: 6.2004
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G066900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.15.8e-2943137186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         rWt+qe+l+Li+++r  e+r+rrg+         +++p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++e++s +++ 
  Potri.001G066900.1  43 RWTRQEILVLIQGKRVAENRVRRGRasgmgigsgQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWETSIREETESFWVMR 133
                         8**********************97778888888**********************************************9999999*999 PP

            trihelix  83 dqle 86 
                         ++l+
  Potri.001G066900.1 134 NDLR 137
                         9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.2E-1243133No hitNo description
PROSITE profilePS500906.443109IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.8E-543108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MALEQQLSLT PTQNPVDGER TNGVDTNIRD GGDDGNKAPR LPRWTRQEIL VLIQGKRVAE  60
NRVRRGRASG MGIGSGQIEP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DFKKIKEWET  120
SIREETESFW VMRNDLRRER KLPGFFDREV YDILDGGGGT VPGLALALAP SSTAAEAEAV  180
AEEVVFDSGR SAAAEDGLFS DFEQEEGGGS PEAVVKEVQP IKMAVTAGVA NPTPISEKQY  240
QPAPRASQAQ VPPNDKRPAT NPEMGSASHE ERKRKRFVID GDEETISLQS HLIDVLERNG  300
KMLTAQLEAQ NTNFQLDREQ RKDHADGLVA VLNKLANALG KIADKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G066900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299351.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-124ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLB9GMT20.0B9GMT2_POPTR; Trihelix family protein
STRINGPOPTR_0001s13060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-113Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]