PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G174300.1 | ||||||||
Common Name | PHAVU_011G174300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 19164.9 Da PI: 8.3768 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141 | 3.7e-44 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++l e +r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ Phvul.011G174300.1 13 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELAEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLR 103 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++lal+++e Phvul.011G174300.1 104 TQLALAEAE 112 ****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.568 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-43 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MKDAGRKQGT LSPCAACKLL RRRCAQDCVF APYFPADEPH KFASVHKVFG ASNVNKMLQE 60 LAEYQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQVD VLRTQLALAE AEVVQMRMSQ 120 VSSSSHQPKP VPAPSNSSSQ NLSPPRRLAM ATTNSLFSMD MVVDHPNMGE SLWSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-47 | 9 | 123 | 7 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-47 | 9 | 123 | 7 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G174300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007133379.1 | 1e-128 | hypothetical protein PHAVU_011G174300g | ||||
Swissprot | Q9SHE9 | 2e-68 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | V7AKI8 | 1e-127 | V7AKI8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007133379.1 | 1e-127 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 6e-64 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G174300.1 |
Entrez Gene | 18616499 |