PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G156800.1 | ||||||||
Common Name | PHAVU_011G156800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 23274.9 Da PI: 6.7959 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.4 | 1.4e-19 | 21 | 74 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+eq+ +Le++F +n+++ e++ +LA++lg++ rqV +W+qN+Ra++k Phvul.011G156800.1 21 NKKRLTEEQVSILEKCFGSNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 74 67789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.8 | 2.2e-36 | 21 | 112 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl++eqv++LE++F ++ kLepe+K +la++Lg+ prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L++elk Phvul.011G156800.1 21 NKKRLTEEQVSILEKCFGSNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKAELK 111 79***************************************************************************************99 PP HD-ZIP_I/II 93 e 93 + Phvul.011G156800.1 112 K 112 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.51E-18 | 13 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.115 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-17 | 18 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.34E-15 | 19 | 77 | No hit | No description |
Pfam | PF00046 | 5.9E-17 | 20 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 22 | 80 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGDLIFSFKN QEHGHHRARH NKKRLTEEQV SILEKCFGSN MKLEPEQKFH LANQLGVPPR 60 QVAIWYQNKR ARWKTQSLEV DHGVLQAKLE NVMAEKKQLE KDVERLKAEL KKAQEMMLVG 120 DVGKGGEHSN TSNNNSNNYN NNNNNGSCGE FSTSFEEGGS SGMVLDDETR HHECWQSGEV 180 MQVEELYAYF MGANYGSSLN EKRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G156800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007133162.1 | 1e-151 | hypothetical protein PHAVU_011G156800g | ||||
TrEMBL | V7AM01 | 1e-150 | V7AM01_PHAVU; Uncharacterized protein | ||||
STRING | XP_007133162.1 | 1e-151 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 9e-35 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G156800.1 |
Entrez Gene | 18616316 |