PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G153000.1 | ||||||||
Common Name | PHAVU_011G153000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 467aa MW: 51497.7 Da PI: 6.9672 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 6.8e-06 | 357 | 395 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Phvul.011G153000.1 357 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 395 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.208 | 346 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.53E-7 | 356 | 399 | No hit | No description |
SuperFamily | SSF47459 | 1.09E-11 | 356 | 413 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0049 | 357 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-9 | 360 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MSDDQFQASG NWWESARNVR FESGETQSSS SGLTNMGNYA WQHDMARSSS MDNSASGGSS 60 VVFHDQKQLQ VQPHHDSTAT NPTNDHPNLH MMGLGLSSQA MDWNQASLQL RGEKGSEGSF 120 RSMLQENLSS PGTTFQQESG NNNIALSHHQ QVHWRPEKLF SAESSSNEFK RGFSLDQTQF 180 SPQYSSGDST VTSQGLPCTF QMDYVGNPSS ILQGLLGHEN NNQQPHQGGS ASFENRPMNF 240 PYSATTYGLS SNIELVPSWS KVPQFLRASP PKQPPNNQLH FTNNAPFWNA NSEPSMKDAR 300 SSFIPSLQPP FSPSNFDVQS KNISEVRDSG VVKKSGSETA PKRPRNENPS PLPAFKVRKE 360 KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHEQVT VLSTPYMKTG APIHHQQSSG 420 KSKECEGPKQ DLRSRGLCLV PVSSTFPVTH EPTVEYWTPT FGGTYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G153000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007133119.1 | 0.0 | hypothetical protein PHAVU_011G153000g | ||||
Swissprot | Q8GXT3 | 3e-87 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | V7AJT6 | 0.0 | V7AJT6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007133119.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 2e-88 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G153000.1 |
Entrez Gene | 18616277 |
Publications ? help Back to Top | |||
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