![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.011G008200.1 | ||||||||
Common Name | PHAVU_011G008200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 240aa MW: 27403.4 Da PI: 5.6746 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 69.2 | 6.4e-22 | 191 | 240 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++Wt+eLH++Fve+v+q+ G+ + +P +ilelm+v+gLt+++v+SHLQ Phvul.011G008200.1 191 KARIVWTSELHRKFVEVVDQI-GPANVVPNKILELMNVPGLTRNNVASHLQ 240 68*******************.9***************************9 PP | |||||||
2 | Response_reg | 60.2 | 1.1e-20 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl +d +p+v+e +++++++ gy ev +++++ a e++++++ ++l+l+ + mp+mdG+e+l ++++++ +i+++ g+++ + +a Phvul.011G008200.1 20 VLAIDTDPSVLEFIKKICNECGY-EVMTCTESLRAAEIFRDRKesFNLVLMEVHMPNMDGYEFL---VNQKMDVHVIMMSFDGDKKSVMKA 106 7899*******************.***************777777*****************96...678889****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 +k+Ga d+ Kp +++++ + Phvul.011G008200.1 107 VKLGACDYWIKPLHEDRIKN 126 ***************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.98E-26 | 16 | 140 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.4E-29 | 17 | 143 | No hit | No description |
SMART | SM00448 | 2.9E-14 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 30.628 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.2E-18 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.75E-18 | 21 | 125 | No hit | No description |
PROSITE profile | PS51294 | 9.709 | 188 | 240 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 189 | 240 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-14 | 189 | 240 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-19 | 191 | 240 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-6 | 195 | 240 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MATVSSDDKV FGQFTSNLRV LAIDTDPSVL EFIKKICNEC GYEVMTCTES LRAAEIFRDR 60 KESFNLVLME VHMPNMDGYE FLVNQKMDVH VIMMSFDGDK KSVMKAVKLG ACDYWIKPLH 120 EDRIKNMWTH IVRKSLSENK MQKNIVGNLE DDGDDQRRVI SDDSTFVFSS TVEIPREVDN 180 VGESENCGRK KARIVWTSEL HRKFVEVVDQ IGPANVVPNK ILELMNVPGL TRNNVASHLQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-15 | 191 | 240 | 1 | 50 | Transcription factor LUX |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.011G008200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007131372.1 | 1e-179 | hypothetical protein PHAVU_011G008200g, partial | ||||
TrEMBL | V7AH19 | 1e-178 | V7AH19_PHAVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_007131372.1 | 1e-179 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14524 | 5 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 2e-56 | response regulator 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.011G008200.1 |
Entrez Gene | 18614775 |