PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G146200.1
Common NamePHAVU_010G146200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92153.3 Da    PI: 6.4314
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G146200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181573357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Phvul.010G146200.1 15 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                        5679*****************************************************97 PP
2START181.45.1e-571593672205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+
  Phvul.010G146200.1 159 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCSGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVLNVLPTAngGT 248
                         7899******************************************************.8888888888****************9999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++
  Phvul.010G146200.1 249 IELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmptVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSV 339
                         ************************************************999889************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s+++ ++kt++a+l+++++
  Phvul.010G146200.1 340 PEVLRPLYESSTVLAQKTTMAALRHLRQ 367
                         ***********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-18573IPR009057Homeodomain-like
PROSITE profilePS5007115.5641074IPR001356Homeobox domain
SMARTSM003891.1E-151278IPR001356Homeobox domain
SuperFamilySSF466891.11E-161476IPR009057Homeodomain-like
CDDcd000861.31E-161575No hitNo description
PfamPF000465.8E-161673IPR001356Homeobox domain
CDDcd146862.64E-667106No hitNo description
PROSITE profilePS5084825.143149363IPR002913START domain
CDDcd088754.30E-80153368No hitNo description
Gene3DG3DSA:3.30.530.202.1E-22158364IPR023393START-like domain
SMARTSM002342.8E-42158368IPR002913START domain
SuperFamilySSF559613.02E-38158368No hitNo description
PfamPF018521.5E-54159367IPR002913START domain
SuperFamilySSF559614.18E-5395489No hitNo description
SuperFamilySSF559614.18E-5519594No hitNo description
PfamPF086705.1E-50693835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSCKDGSKNG MDNGKYVRYT PEQVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKESSRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRQHTQ  120
NATQATKDTS CESAVTSGQH SLTTQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIVAISHGC SGVAARACGL VGLEPTRVAE ILKDRPLWFR DCRAVDVLNV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVICERSLK NTQNGPSMPT  300
VQHFVRAEML PSGYLIRPCE GGGSIIHIVD HMDLEPWSVP EVLRPLYESS TVLAQKTTMA  360
ALRHLRQISH EVSQSNVTGW GRRPAALRAL SQRLSRGFNE ALNGFTDEGW TTIGNDGVDD  420
VTILVNSSPD KLMGLNLPFT NGFPSVSNAV LCAKASMLLQ NVPPAILLRF LREHRSEWAD  480
NNMDAYTAAA IKVGPCSLSG SRVGNYGGQV ILPLAHTIEH EECLEVIKLE GIAHSPEDTI  540
MPREMFLLQL CSGMDENAVG TCAELISAPI DASFADDAPL LPSGFRIIPL ESGKEASSPN  600
RTLDLASALD IGPSGNRASN ECAGNSSCMR SVMTIAFEFA FESHMQDHVA SMARQYVRSI  660
ISSVQRVALA LSPSHLSSQA GLRSPLGTPE AQTLAHWICN SYRCYLGVEL LKSNNEGNES  720
LLKSLWHHSD AILCCTLKAL PVFTFSNQAG LDMLETTLVA LQDISLEKIF DDHGRKILFS  780
EFPQIIQQGF ACLQGGICLS SMGRPVSYER VVAWKVLNEE ENAHCICFMF MNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G146200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135643.10.0hypothetical protein PHAVU_010G146200g
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLV7APR60.0V7APR6_PHAVU; Uncharacterized protein
STRINGXP_007135643.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]