PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G117200.1
Common NamePHAVU_010G117200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 310aa    MW: 35574.4 Da    PI: 6.5161
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G117200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18104155556
                         SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         ++f+++q++ Le++Fe ++ +  +++ +LA+ lgL+ rqV +WFqN+Ra++k
  Phvul.010G117200.1 104 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 155
                         48*************************************************9 PP
2HD-ZIP_I/II118.73.1e-38103193393
         HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                          rr+s++q+k+LE++Fe+e++Lep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE+dy  L+++y++l+++ ++L+ke+++L  +l++
  Phvul.010G117200.1 103 TRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFDALKKEKQTLLIQLQK 193
                         79***********************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1782159IPR009057Homeodomain-like
PROSITE profilePS5007116.95797157IPR001356Homeobox domain
SMARTSM003893.5E-15100161IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-18104163IPR009057Homeodomain-like
CDDcd000862.53E-13104158No hitNo description
PfamPF000466.7E-16104155IPR001356Homeobox domain
PRINTSPR000312.7E-5128137IPR000047Helix-turn-helix motif
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PRINTSPR000312.7E-5137153IPR000047Helix-turn-helix motif
PfamPF021831.2E-16157199IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSFGYKAINW GLHSDHHDRN SNKQKPIDTC ISQNTHTHSL SKKNLLSPNS PILNSKPFSL  60
SKQQVRVLHN MEYTYSAEAE TYTSSSTTPS SAMRSKKKAN NNTRRFSDDQ IKSLETMFET  120
ESRLEPRKKL QLARDLGLQP RQVAIWFQNK RARWKSKQLE RDYGILQSNY NSLASRFDAL  180
KKEKQTLLIQ LQKLNHLMQK PLEPGQSRTQ DEAANSMDSE SENGGTMKCE HEEKPSPTME  240
RSEHVHGVLS DDDASIKVED FGLEDEHDLM NFVEHADDSL TSPEDWSAFE SNGLLGQTTS  300
DYQWWDFWS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G117200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311750.0KT031175.1 Glycine max clone HN_WYQ_3 homeodomain/HOMEOBOX transcription factor (Glyma07g05800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135294.10.0hypothetical protein PHAVU_010G117200g
SwissprotP468971e-65ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLV7ARQ40.0V7ARQ4_PHAVU; Uncharacterized protein
STRINGXP_007135294.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-66homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]