PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.010G100300.1

Common Name

PHAVU_010G100300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB_related

Protein Properties

Length: 568aa MW: 63318.9 Da PI: 5.2926

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.010G100300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.4e-08	455	504	1	47
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 r+ WT+eE+ ++ d+v+ ++ W+ I r ++ +++++++s+++++ Phvul.010G100300.1 455 RLMWTKEEERKFEDVVRSNPPSpekyFWDYIFRAFP-DKSREDLVSYYFNV 504 678***************88**********.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01189	2.0E-4	359	409	IPR000949	ELM2 domain
CDD	cd00167	3.18E-4	458	505	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MGVSVGSSVE LLYSRYLSAL DSWMKKIAES KVSPEFGVVD NRDKFGRRLM ELQAEVEGLL 60 SGCAEDGVVV AGEDDHKFDG REFCGANGVK GNGDEGGEHR ECSDSELPDH DMNEAVLGNS 120 GKGNDAMGWQ GGFHGGKMSE EQAVDVMDGA NNSGAGLVSG GTKGGDSDDK GLVLDASGGN 180 SDGDSSGHKR KREGSVLDSS SDDSDSPSRK RMREPAMEML SWVTGVAKNP SDPEVGSIPE 240 KSKWKSYSSQ EVWKQVLFFR EAVFYRRGAE PSTEQRNWQN QKMHPCLYED QVGTNYNLRD 300 RLKCDKKLLF GKYTSVRSSS DSSLETENRT PSPRTEGQSE LFDSSDAHSG LDKWGTVRIP 360 LGANHQAEIP KWTGVTFESD SKWLGTRIWP QEAVNTRLIE RDPIGKGRQG SCGCSEEGSV 420 ECVRFHISEK RAKVQLELGK AFYDWNFDRV GEEVRLMWTK EEERKFEDVV RSNPPSPEKY 480 FWDYIFRAFP DKSREDLVSY YFNVFMLQRR GYQNRHTPDD IDSDDNDEEA GPLRNVFGHQ 540 IKNSGHQMQS SRGSILLTPK KSHKKGK*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MGVSVGSSVE LLYSRYLSAL DSWMKKIAES KVSPEFGVVD NRDKFGRRLM ELQAEVEGLL  60
SGCAEDGVVV AGEDDHKFDG REFCGANGVK GNGDEGGEHR ECSDSELPDH DMNEAVLGNS  120
GKGNDAMGWQ GGFHGGKMSE EQAVDVMDGA NNSGAGLVSG GTKGGDSDDK GLVLDASGGN  180
SDGDSSGHKR KREGSVLDSS SDDSDSPSRK RMREPAMEML SWVTGVAKNP SDPEVGSIPE  240
KSKWKSYSSQ EVWKQVLFFR EAVFYRRGAE PSTEQRNWQN QKMHPCLYED QVGTNYNLRD  300
RLKCDKKLLF GKYTSVRSSS DSSLETENRT PSPRTEGQSE LFDSSDAHSG LDKWGTVRIP  360
LGANHQAEIP KWTGVTFESD SKWLGTRIWP QEAVNTRLIE RDPIGKGRQG SCGCSEEGSV  420
ECVRFHISEK RAKVQLELGK AFYDWNFDRV GEEVRLMWTK EEERKFEDVV RSNPPSPEKY  480
FWDYIFRAFP DKSREDLVSY YFNVFMLQRR GYQNRHTPDD IDSDDNDEEA GPLRNVFGHQ  540
IKNSGHQMQS SRGSILLTPK KSHKKGK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.010G100300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007135094.1	0.0	hypothetical protein PHAVU_010G100300g
TrEMBL	V7AR42	0.0	V7AR42_PHAVU; Uncharacterized protein
STRING	XP_007135094.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4373	17	24

Link Out ? help Back to Top
Phytozome	Phvul.010G100300.1
Entrez Gene	18617990