PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G220700.1 | ||||||||
Common Name | PHAVU_009G220700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | WRKY | ||||||||
Protein Properties | Length: 417aa MW: 45988.2 Da PI: 8.0291 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.3 | 7.4e-29 | 202 | 260 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrC++ Cpv+k+v+r+ +d++v+++tYeg+Hnh+ Phvul.009G220700.1 202 GDGCQWRKYGQKTAKGNPCPRAYYRCSMGtACPVRKQVQRCFKDETVLITTYEGSHNHP 260 69**************************98****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-31 | 186 | 262 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-27 | 194 | 262 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.506 | 196 | 262 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-33 | 201 | 261 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 203 | 260 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MEEKSSLKSL LKDEERPYDC NTTRNRTDEP SMGSTLLCLS LNNSGQPFNQ MGILRMKLEE 60 AKKENEILKA MLTQVNEHCT VLQNRILFEM QQHQLSSSPC NNNNNHDSQG EMQDVEKPML 120 HTRQFLNIGD CSSSLSEGYK ENFVKKMLGR SLACEKNNVV EGEMKKKIAL DEAKCREDQA 180 SEVTCRRAKV SIRARSDFSM MGDGCQWRKY GQKTAKGNPC PRAYYRCSMG TACPVRKQVQ 240 RCFKDETVLI TTYEGSHNHP LPPAARGLAS STSAALNMFL CGSISSSVAT TTPPNSPLFS 300 SSLSSISPTA LATFSHNATC PTVTLDLTHP NSNNYLHFQT HPLFPLPLHA HSPTLLTPDK 360 NLTLVDVVSE AITKDPSLKA ALFSAISSLS KSNSGYDPCS KMPAIPPHQP YTTELT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 188 | 264 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G220700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 2e-91 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138579.1 | 0.0 | hypothetical protein PHAVU_009G220700g | ||||
TrEMBL | V7B105 | 0.0 | V7B105_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138579.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13945 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 6e-59 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G220700.1 |
Entrez Gene | 18620943 |