PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G206500.1 | ||||||||
Common Name | PHAVU_009G206500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | AP2 | ||||||||
Protein Properties | Length: 347aa MW: 39530.5 Da PI: 7.1008 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.4e-12 | 45 | 101 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Phvul.009G206500.1 45 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 101 57*******************99998898888888********************98 PP | |||||||
2 | AP2 | 51.3 | 2.9e-16 | 144 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Phvul.009G206500.1 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-15 | 45 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-8 | 45 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.821 | 46 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-13 | 46 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-20 | 46 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.22E-23 | 144 | 205 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 144 | 205 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.3E-12 | 144 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 145 | 203 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-17 | 145 | 204 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 145 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 185 | 205 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGKHQRHNKT NASTNTNLNA TNTVPTKVKR TRRSVPRDSP PQRSSIYRGV TRHRWTGRYE 60 AHLWDKNCWN ESQNKKGRQG AYDDEEAAAH AYDLAALKYW GQDTILNFPL STYQNEVKEM 120 ECQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE 180 EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LKPNNNDNTV NSNILHANPN PNSETNSTPS 240 SNEQQGFNFF QSQESTMAQP RPSGATSALG LLLQSSKFKE MMEMTSAADL STERSESELL 300 PCTFPDDIQT YFECEDSNIY GEGAENMFSE LNSFVPHMFH CDEFET* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G206500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-170 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138410.1 | 0.0 | hypothetical protein PHAVU_009G206500g | ||||
Swissprot | Q94AN4 | 1e-108 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | V7AXV2 | 0.0 | V7AXV2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138410.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 6e-96 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G206500.1 |
Entrez Gene | 18620794 |
Publications ? help Back to Top | |||
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