PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G189700.1
Common NamePHAVU_009G189700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 596aa    MW: 64914.9 Da    PI: 6.5152
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G189700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.5e-30242300259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Phvul.009G189700.1 242 NDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCAQDMTILITTYEGTHNHP 300
                         8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-31226302IPR003657WRKY domain
SuperFamilySSF1182901.57E-26234302IPR003657WRKY domain
PROSITE profilePS5081128.541236302IPR003657WRKY domain
SMARTSM007741.3E-35241301IPR003657WRKY domain
PfamPF031067.0E-26242300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MEFGSERSAQ EVKEEKRTES TLGGQEHRRQ QEIVMQEASL ATPERSLVEV GPNVSCLSKK  60
EEVDELQNAK AEMGEVIEEN QRLKMRLNRI LNDYRTLQMQ FHSITEQETK DCSDKPKNDE  120
EMREESELVS LSLGRIPIPR NNEKGKVPKT LEEEEDEEGL SLGLECKYET SKSGSTTEHV  180
PNPSPTNSVE EVPKEEAAGE SWPASKGHKT NRDVGEVEVP EQNPAKKARV CVRARCDTPT  240
LNDGCQWRKY GQKISKGNPC PRAYYRCTVA PSCPVRKQVQ RCAQDMTILI TTYEGTHNHP  300
LPLSATAMAS TTSAAASMLL SGSSTSHSGS SPSPNITTTA ADLHGIKFSL SDGSQSKQYY  360
LSHPALSSSN SHPTITLDLT SNPLSSSAPF AKFTSNSNYN PQRYPPSTSL SFSSSESNTS  420
SWSNGFFTYN TQPYNNNRNA NVNILGNINL GRQQPEQQPM ENIYSSFMQR NNNIIPPAQH  480
SLPDTIAAAT KVITADPNFQ SALAAALSSI IGSGSSQGNQ GAAENPSQKI KWGELFPPSF  540
ALPSSSKVNG CASSFLNKSP ANPQQGSLMF LQPPLPLSSP KSASGSPGDH REKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20228302174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G189700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138208.10.0hypothetical protein PHAVU_009G189700g
TrEMBLV7AX340.0V7AX34_PHAVU; Uncharacterized protein
STRINGXP_007138208.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.18e-58WRKY DNA-binding protein 72