PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G149200.1
Common NamePHAVU_009G149200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 219aa    MW: 24832.9 Da    PI: 6.9128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G149200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08127167954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR++i +++  L++l+P       +K++ a++L +A++Y+k L
  Phvul.009G149200.1 127 ARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 167
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14123177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-10124172No hitNo description
SMARTSM003531.1E-12124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12124176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6128167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDTNLNTTFT NVNTTYNHQT MPTDQHNITL HDHHHHQQHH QIPMGVGIWS NHHHPFHTHP  60
SSSSSTNFLT EVLGVQFEED EEEELGAMKE MMYQMAAMQP VDIDPATVRK PKRRNVRISD  120
DPQSVAARHR REKISEKIRI LQRLVPGGTK MDTASMLDEA IRYVKFLKRQ IRLLQSTPQI  180
DPNSDCPFAP ITSHASTSIN NLPLGMDFNA TVHAHAAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G149200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137709.11e-163hypothetical protein PHAVU_009G149200g
TrEMBLV7AYM61e-162V7AYM6_PHAVU; Uncharacterized protein
STRINGXP_007137709.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-48bHLH family protein