PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G142900.1

Common Name

PHAVU_009G142900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bZIP

Protein Properties

Length: 289aa MW: 32231 Da PI: 6.2317

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G142900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.7e-10	94	151	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK ++ eLe+k+++L++e ++L +l+ + l se Phvul.009G142900.1 94 KRAKRILANRQSAARSKERKACYVSELERKFQSLQTEATTLSAQLSLFQRDTTGLSSE 151 9*****************************************9999887776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-15	90	154	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.3	92	155	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.12E-10	94	148	No hit	No description
Pfam	PF00170	6.9E-9	94	152	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.2E-10	94	149	No hit	No description
CDD	cd14703	2.20E-21	95	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSFAHHRRTQ SEMHFRITDD FDLEVDLSPP HFQDPTPPNQ FGPKPESPPH ETARSGHRRS 60 NSADTSSSSL LEGIEAKKAL SPDKLAELWT VDPKRAKRIL ANRQSAARSK ERKACYVSEL 120 ERKFQSLQTE ATTLSAQLSL FQRDTTGLSS ENTELKLRLQ AMEQQAKLCD ALNEALKKEV 180 DRLRVATGDM AMPADNYGLG MHQLTYSQGP FFSHQSQHGQ SAVQAMQMPQ MHSLSSNVST 240 SHEPLFDLDI PYDMSEMLSN ESIGQFQGLD IGNGVPHVLM PDYPSNFC*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G142900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-153	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007137632.1	0.0	hypothetical protein PHAVU_009G142900g
Refseq	XP_007137633.1	0.0	hypothetical protein PHAVU_009G142900g
Refseq	XP_007137634.1	0.0	hypothetical protein PHAVU_009G142900g
Swissprot	O22873	8e-74	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	V7AVD7	0.0	V7AVD7_PHAVU; Uncharacterized protein
STRING	XP_007137632.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-73	bZIP family protein

Link Out ? help Back to Top
Phytozome	Phvul.009G142900.1
Entrez Gene	18620141

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]