PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

ERF

Protein Properties

Length: 195aa MW: 21559.4 Da PI: 5.3694

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G109600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.7	7e-19	32	82	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Phvul.009G109600.1 32 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 82 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.3E-13	32	82	IPR001471	AP2/ERF domain
SMART	SM00380	7.6E-37	33	96	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-22	33	91	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.38	33	90	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.8E-32	33	91	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-10	34	45	IPR001471	AP2/ERF domain
CDD	cd00018	4.85E-32	34	92	No hit	No description
PRINTS	PR00367	1.8E-10	56	72	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MRVSAEKTTS SETEASPETK KIKRIRDSSK HPVYRGVRMR NWGKWVSEIR EPRKKSRIWL 60 GTFPTPEMAA RAHDVAALSI KGSAAILNFP HLANSLPRPA SLAARDVQAA AAKAAHMEPS 120 SLSSLVSAMD LSCASEDLTE IVELPSLEST DDGCVELEKE FVFVDSVDTW MYQPAAFDFD 180 AERDIVFEGL VWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-21	28	94	9	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G109600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007137220.1	1e-141	hypothetical protein PHAVU_009G109600g
Swissprot	Q9LYD3	5e-70	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	V7AUG8	1e-140	V7AUG8_PHAVU; Uncharacterized protein
STRING	XP_007137220.1	1e-140	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	8e-60	ERF family protein

Link Out ? help Back to Top
Phytozome	Phvul.009G109600.1
Entrez Gene	18619788

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]