PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.009G089000.1 | ||||||||
Common Name | PHAVU_009G089000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 30521.2 Da PI: 6.8968 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Phvul.009G089000.1 92 FSCNYCHRKFYSSQALGGHQNAH 114 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.32E-6 | 89 | 119 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
METLSYEAPF YDSLSAVETP PSPSTPLQNP QEKKQLSVEE EEEEEKETKT GTLLDLNIPG 60 DDSATECSPV LNLITCLNTD LSSENPHEPR VFSCNYCHRK FYSSQALGGH QNAHKRERSV 120 AKRGHRSASA MMAPATAFGI PFLHNHLPHY ATVASLPLHG ACINKPLGIQ AHCMIHKPPP 180 PPPSSHLSFN GFSNTIGHHH HGWSRSRPLI TQQPGIGKLT MESCHKTSRG SFGRLEAGST 240 MLNSAVNEEI SEYLVSENVS FKSSQEQKQH LDLSLKL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.009G089000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007136968.1 | 0.0 | hypothetical protein PHAVU_009G089000g | ||||
TrEMBL | V7ATI0 | 0.0 | V7ATI0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007136968.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10970.1 | 2e-37 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.009G089000.1 |
Entrez Gene | 18619578 |