PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G074300.1 | ||||||||
Common Name | PHAVU_009G074300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | AP2 | ||||||||
Protein Properties | Length: 658aa MW: 72516.8 Da PI: 7.3484 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.7e-16 | 299 | 358 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Phvul.009G074300.1 299 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 358 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.8 | 7.5e-15 | 401 | 452 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Phvul.009G074300.1 401 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 452 57****************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.12E-21 | 299 | 365 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-16 | 299 | 368 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.0E-13 | 299 | 358 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-15 | 300 | 366 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-27 | 300 | 372 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.782 | 300 | 366 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 301 | 312 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-10 | 401 | 452 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.72E-26 | 401 | 462 | No hit | No description |
SuperFamily | SSF54171 | 5.43E-18 | 401 | 462 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-19 | 402 | 460 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 402 | 460 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-34 | 402 | 466 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 442 | 462 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MKGMDESSTD DGNNHNWLGF SLSPHMKMEV TSAATVPTTF YMSSPHISSS GICYGVGANG 60 NFHSPLTVMP IKSDGSLCIL EALNRSQSEV MVPNSTPKLE DFLGGATMGS HEYGSHERGA 120 NAMALSLDSI YYSTQNAQAQ PNRDTLSEPF RQQGHMNVQT HPYYSGLGGC HGMYQAQLEE 180 EATKEAHASV CSSLMPQMTE NSLKNWVATR EYSTQQQILE QQMNCGMGNE RSGMSLGTVG 240 CGELQSLSLS MSPGSQSSCV TAPSVTDSVA VDAKKRGHVK GQKQPVHRKS IDTFGQRTSQ 300 YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD MEEKAARAYD LAALKYWGPS 360 THINFSIENY QVELEEMKNM SRQEYVAHLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG 420 RVAGNKDLYL GTFSTQEEAA EAYDVAAIKF RGANAVTNFD ISRYDVERIM GSINLLAGEL 480 ARRNKDNDPR NEGSEYNIEK NNKGVVTSQS NEEMVQGRNN NENDSEWKMV LLNHPSQQQQ 540 SNGSEQKLMN CGNYRNSAFS GALQDLIGID SVDMCSKIGT HFSNASSLVT SLSSSREASP 600 EKTGPSLLFP KPPMETKIVN PISTSVTSWL PSPTVQMRPP PAISLSHLPV FAAWTDT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G074300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007136788.1 | 0.0 | hypothetical protein PHAVU_009G074300g | ||||
Swissprot | Q38914 | 1e-157 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | V7AT05 | 0.0 | V7AT05_PHAVU; Uncharacterized protein | ||||
STRING | XP_007136788.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-152 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G074300.1 |
Entrez Gene | 18619427 |