PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G043700.1
Common NamePHAVU_009G043700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 251aa    MW: 28489.3 Da    PI: 9.8267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G043700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.4e-066991123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k Fs++  L  H++ H
  Phvul.009G043700.1 69 FSCNYCNKEFSTSQALGGHQNAH 91
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.04E-76696No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.0E-76993IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.8846996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKYCEKKSLV PHQNQGSNSN TRVLVDFMKM SKDDDIIQEQ SHKKVIDSSI SHSKCAVKKN  60
TKVEKTKTFS CNYCNKEFST SQALGGHQNA HKQERVVAKL RQGFDVKGLA QFPYYPYYSG  120
FYNSHSLHGR SFNDALGIRS DSMIHKLPKT SRYEHSLFKR DHEKLIFDGF RNMKNDYPII  180
KSGATLSLKP KDDNDRINIE IQPLFTNGVV TSSSQVRKMT TLATTKIGDH YVPKETSDEP  240
ACNLDLSLKL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G043700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136421.10.0hypothetical protein PHAVU_009G043700g
TrEMBLV7ASW30.0V7ASW3_PHAVU; Uncharacterized protein
STRINGXP_007136421.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.17e-15C2H2 family protein