PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G241200.1
Common NamePHAVU_008G241200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 651aa    MW: 74089.4 Da    PI: 5.0202
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G241200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.16.6e-5751321128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd
  Phvul.008G241200.1   5 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKD 94 
                         79****************************.99***************6434445667********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v s k + vg+kktLv+y+grap+g++t+Wvmheyrl
  Phvul.008G241200.1  95 RKVNS-KARSVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 132
                         *****.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-643155IPR003441NAC domain
PROSITE profilePS5100561.7095155IPR003441NAC domain
PfamPF023658.2E-316132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MAPVLPPGFR FHPTDEELVA YYLKRKINGR KIELEIIPEV DLYKCEPWDL PGKSLLPGKD  60
LEWYFFSPRD RKYPNGSRTN RATKSGYWKA TGKDRKVNSK ARSVGMKKTL VYYRGRAPHG  120
SRTNWVMHEY RLDERECETA SGLQDAYALC RVLKKTAVIP QKVEGHYVEV PNVNQITSDQ  180
SSSIELYSEG RGEDLDSSNY FMSVNTCSPH NLGIETPLNI SGGTTRDHEK WSHVSLQDPM  240
FSLPTSYPHF GAYLPSKVDI ALECARMQHR FVMPPLEVDD FPQVGISELK MTQASSSMQG  300
SRPETDILQE ILSVAHASQE LINQSSYSQE WGGNDYYYAP RDDDFTFMVG TNYNHSNEMS  360
SARYVDKAWE DANTRTIEIG DMDQEFKAER MVENLRWVGM SREDLEKMEE QNIVPIEDIS  420
SLQTNMKENE VQEYEQHNME HNDTEINDFS LGFINDSDPT ENFTEDGNSD DYSGSPSFEV  480
VEEIKVNRGM FVSTGQVAET FFHQMVPSQT VQVQLNTVMA HDHYVENAEA MLLIMEDQGS  540
LRKVKAYVMG KLLKPSMTIA SAVVFVFALV LMHYAFIKGE VKIWNETCCS NSGSIMKKTS  600
QSSQIMKWNE PNEVWFVGIK SEKGLSAVLK KIGIFLTISF ALCTMWANHN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-56515717167NO APICAL MERISTEM PROTEIN
1ut4_B8e-56515717167NO APICAL MERISTEM PROTEIN
1ut7_A8e-56515717167NO APICAL MERISTEM PROTEIN
1ut7_B8e-56515717167NO APICAL MERISTEM PROTEIN
3swm_A7e-56515720170NAC domain-containing protein 19
3swm_B7e-56515720170NAC domain-containing protein 19
3swm_C7e-56515720170NAC domain-containing protein 19
3swm_D7e-56515720170NAC domain-containing protein 19
3swp_A7e-56515720170NAC domain-containing protein 19
3swp_B7e-56515720170NAC domain-containing protein 19
3swp_C7e-56515720170NAC domain-containing protein 19
3swp_D7e-56515720170NAC domain-containing protein 19
4dul_A8e-56515717167NAC domain-containing protein 19
4dul_B8e-56515717167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G241200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141968.10.0hypothetical protein PHAVU_008G241200g
TrEMBLV7B7U70.0V7B7U7_PHAVU; Uncharacterized protein
STRINGXP_007141968.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-152NAC domain containing protein 28