PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G184800.1 | ||||||||
Common Name | PHAVU_008G184800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 37126.7 Da PI: 4.7314 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 6.8e-12 | 163 | 206 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Phvul.008G184800.1 163 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 206 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-15 | 161 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-12 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 163 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.43E-5 | 164 | 210 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 164 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00395 | 252 | 293 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MELYDHDFLE ESTALRREPW DTNPRSQENQ PFSNAWSFDC FDQNYQSFPS NSFCFQQVPQ 60 SYNFDYTFNE IYSSLLDEFS APQIVDSSYN TPPFVAHEDY PLSMMEEEDP GLLGEELHCL 120 DLQATCKMEP SHSPERPVFN TDPCVERKNN RAKKLQGQPS KNLMAERRRR KRLNDRLSML 180 RSIVPKISKM DRTSILGDTI DYMKELLEKI NNLKQEIEVD SNTATIFKDS KPNELLVRNS 240 PKFDVERRNG NTRVEICCAG KPGLLVSTVN TLETLGLEIQ QCVISCFNDF TVQASCSEQK 300 TILSSEDIKQ ALFRSAGYGG RCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 172 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G184800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097325 | 0.0 | BT097325.1 Soybean clone JCVI-FLGm-16G7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141308.1 | 0.0 | hypothetical protein PHAVU_008G184800g | ||||
Swissprot | Q9LSL1 | 9e-78 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | V7B5W4 | 0.0 | V7B5W4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141308.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 4e-80 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G184800.1 |
Entrez Gene | 18623299 |
Publications ? help Back to Top | |||
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