PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G177500.1
Common NamePHAVU_008G177500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 317aa    MW: 35440.1 Da    PI: 6.7165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G177500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13119170155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Phvul.008G177500.1 119 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 170
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.91E-14117174No hitNo description
SuperFamilySSF474592.36E-16118181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13118173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-10124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MALEAVVFPQ DPFTYPCNKD YFYSLLQNNF QQVENKAFVG IITNNIDHTL HANWDSSSPS  60
ALQNVKDQWD SHSSPEPCTV DQSLPAAFPP PPSSTEPTTG RRKRRRTKST KNKEEIENQR  120
MTHIAVERNR RKQMNEYLAV LRSLMPPSYV QRGDQASIIG GAINFVKELE QLLQCLKGQQ  180
RTKENVGGFD SSPFAEFFMF PQYSTRATQN SRGYPSTCEA RNHSWAVADI EVTLVDGHAN  240
IKILTKKLPG LLLKMVVGLQ TLAFTILHLN VTTVDDMVLT SVSVKIEEGC EAKTVDEIAG  300
AVHELSQRIQ EEAVLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105RKRRR
2101106RKRRRT
3119130RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G177500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141222.10.0hypothetical protein PHAVU_008G177500g
SwissprotQ9C7T42e-86BH096_ARATH; Transcription factor bHLH96
TrEMBLV7B9T70.0V7B9T7_PHAVU; Uncharacterized protein
STRINGXP_007141222.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]