PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

ERF

Protein Properties

Length: 328aa MW: 36013.4 Da PI: 5.4435

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G172200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.3	1.2e-20	143	192	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Phvul.008G172200.1 143 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 192 59****9.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.29E-34	142	202	No hit	No description
SuperFamily	SSF54171	5.82E-23	143	201	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.9E-32	143	201	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.103	143	200	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-37	143	206	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-11	144	155	IPR001471	AP2/ERF domain
Pfam	PF00847	3.8E-14	144	192	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-11	166	182	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MAAMMDLYNG EPQVQSDPFT GELMEVLEPF MKSPSSTPSL SSDSALPSTS TSYSYSPYPL 60 SLPPHPNFYT DPSSSYLYQT QTLIGFQQQP SSVVGLNHLS PFQVSQIQAQ MQAQSQSSLS 120 LNFLGPKPVA MKQVGGAPKP AKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA 180 LAYDKAAYRL RGDFARLNFP NLKGSLLGEY KPLQSAVDAK LDAICQSLAE MPKQGKTEKG 240 ARSSSKKSKA APKEARNPNQ DPNPNLCCKA EPEPEAEPAL SPESEGSVDS SPLSDLTFDV 300 SEPQWEDASA HFNLQKFPSY EIDWDSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-21	142	200	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G172200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007141161.1	0.0	hypothetical protein PHAVU_008G172200g
Swissprot	Q8H1E4	5e-86	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	V7B6I3	0.0	V7B6I3_PHAVU; Uncharacterized protein
STRING	XP_007141161.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1057	32	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	1e-56	related to AP2 4

Link Out ? help Back to Top
Phytozome	Phvul.008G172200.1
Entrez Gene	18623169

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]