PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G144300.1
Common NamePHAVU_008G144300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 479aa    MW: 51578.4 Da    PI: 8.9295
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G144300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-15297342555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Phvul.008G144300.1 297 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 342
                         9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-18290354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-13297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-18297350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-17297346No hitNo description
SMARTSM003532.2E-18298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MILNNANKHQ KHTSSIFNSS PKMSQCVPSW DLDDNPPSPR LSLRSNSNSN SNSTAPDVPM  60
LDYEVAELTW ENGQLSMHGL GLPRVPVKPP TSAANKYTWE KPRASGTLES IVNQATSLPH  120
SGKPTLNGDG GVYGNYLVPW LDPHGSAGTA NTVTMDALVP CSKREQSKQG MKSVPSTCMV  180
GCSTRVGSCC GNHGAKGQEM SGRDQSVSGS ATFGRDSKHV TLDTCDREFG VAFTSSSINS  240
LDNTSSAKHC TNTTTVDDHD SVSHSKPVGE NGDEEKKQRA KGKSSVSTKR SRAAAIHNQS  300
ERKRRDKINQ RMKTLQKLVP NSSKTDKASM LDEVIEYLKQ LQAQVQMMNR INMSSMMLPL  360
TMQQQLQMSM MSPMGMGLGM GMGMGMGMGL DMNSMNRANI PAIPPVLHPS AFMPMAASWD  420
AAAAGAADRF QGNPATVMPD PLSTLFGCQS QPMTMDAYSR LVAMYQQLHQ PPVSGSKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305ERKRRD
2301306RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G144300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140812.10.0hypothetical protein PHAVU_008G144300g
SwissprotQ8GZ381e-107UNE10_ARATH; Transcription factor UNE10
TrEMBLV7B8J70.0V7B8J7_PHAVU; Uncharacterized protein
STRINGXP_007140812.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]