PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.008G143900.1 | ||||||||
Common Name | PHAVU_008G143900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 385aa MW: 43356.6 Da PI: 5.5171 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.0004 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksFs+ L H+r+H Phvul.008G143900.1 4 HKCKLCFKSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00034 | 257 | 279 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k+F++ L H +H Phvul.008G143900.1 257 YKCDTCNKVFRSYQALGGHRASH 279 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.37E-5 | 3 | 31 | No hit | No description |
Pfam | PF13912 | 1.8E-6 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.038 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.866 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.9E-13 | 256 | 281 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.36E-8 | 256 | 279 | No hit | No description |
PROSITE profile | PS50157 | 10.367 | 257 | 284 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 257 | 279 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 259 | 279 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.36E-8 | 306 | 333 | No hit | No description |
PROSITE profile | PS50157 | 9.307 | 311 | 338 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-10 | 311 | 333 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 311 | 333 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 313 | 333 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 385 aa Download sequence Send to blast |
MDKHKCKLCF KSFSNGRALG GHMRSHMMNL PLSKPEEASP RTIQLSFEAD SASSSSSSSS 60 DDDDDGDKGL CYGLRENPKR SIRLVDPEFS FAAADTGSAI LHDRESESES SKSNPTRKRS 120 KRPWNNNNNN NNNYYYFNDN NNNDTNNYTT PSMKKQVFGT EHEALMKKKS KTESWVDHEP 180 ASSVSEATTE EDVAFCLMLL SRDKWKRHKE QPQFVEVEDQ YEEEEEEEEE EEDEAFEESE 240 ESQETMKLCK NRVRGRYKCD TCNKVFRSYQ ALGGHRASHK KIKVNVKMDG EEAEVEHRKK 300 SGTCGVEKKI HECPVCFRVF ASGQALGGHK RTHVTGSAPA TVPSTSAKFG NSFIDLNLPA 360 PIDEDEASQI ENSAVSDAEF VKTR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.008G143900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007140808.1 | 0.0 | hypothetical protein PHAVU_008G143900g | ||||
TrEMBL | V7B4H7 | 0.0 | V7B4H7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007140808.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 5e-62 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.008G143900.1 |
Entrez Gene | 18622869 |