PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

ERF

Protein Properties

Length: 310aa MW: 33899.2 Da PI: 6.5094

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G141000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.1	3.8e-17	117	168	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a ++++g+ Phvul.008G141000.1 117 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVATLAIKGH 168 57***998.******843...6******************99988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.5E-12	117	168	IPR001471	AP2/ERF domain
CDD	cd00018	1.36E-31	117	177	No hit	No description
Gene3D	G3DSA:3.30.730.10	6.6E-31	118	176	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-21	118	176	IPR016177	DNA-binding domain
SMART	SM00380	1.1E-35	118	181	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.893	118	175	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-10	119	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-10	141	157	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MCPSLILCSS LIKPHPLAFF LGKHINMESD AGENLFGTFF SSSTSMTISI TTHTISSSSS 60 SSAAASPTSS TSSSNSCTKQ DSQTSPPDDS TRPQNKNTPN SKERKKRQRN GSDNKHPSYR 120 GVRMRAWGKW VSEIREPRKK SRIWLGTYPT AEMAARAHDV ATLAIKGHSA YLNFPNLAQD 180 LPRPITTSPK DIQAAAAKAA STFFDDDKHC EAEKDEENHA EQASSSTLRM DSTEAEQVQA 240 KQASSFTLSM DNTQGSSTSH STADDDTLFD LPDLFPDGNN GLFSNSSSWR LCAVDSGFRH 300 EEQLLWENY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-17	111	176	7	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G141000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140776.1	0.0	hypothetical protein PHAVU_008G141000g
Swissprot	Q8LBQ7	2e-63	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	V7B5C7	0.0	V7B5C7_PHAVU; Uncharacterized protein
STRING	XP_007140776.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	5e-51	ERF family protein

Link Out ? help Back to Top
Phytozome	Phvul.008G141000.1
Entrez Gene	18622840

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]