PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G117400.1
Common NamePHAVU_008G117400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 189aa    MW: 21467.2 Da    PI: 8.2277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G117400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154264123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C+k Fs+   L  H+++H
  Phvul.008G117400.1 42 YSCYFCKKGFSNAQALGGHMNVH 64
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.33E-73970No hitNo description
Gene3DG3DSA:3.30.160.606.9E-53968IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1984269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSSCYFPFTC QRKMEFNTQN YKKSEIRWSS DDQGGPGQKK SYSCYFCKKG FSNAQALGGH  60
MNVHRKDRAM LKQSSEESLL SLDISIKTTS DHNNNGPSDL EEKILFRLGS GEDQKHARNC  120
KMPFNFPHKN DHDYAVERGM LIGTAEIPHL PSFVLGQRIE EKKADLDLEL RLGLHPQESA  180
TLNTRSFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G117400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140495.11e-141hypothetical protein PHAVU_008G117400g
TrEMBLV7B3T61e-139V7B3T6_PHAVU; Uncharacterized protein
STRINGXP_007140495.11e-140(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-18C2H2 family protein